/*
 * Copyright (c) 2018 - 2022 The Hyve B.V.
 * This code is licensed under the GNU Affero General Public License (AGPL),
 * version 3, or (at your option) any later version.
 */

/*
 * This file is part of cBioPortal.
 *
 * cBioPortal is free software: you can redistribute it and/or modify
 * it under the terms of the GNU Affero General Public License as
 * published by the Free Software Foundation, either version 3 of the
 * License.
 *
 * This program is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 * GNU Affero General Public License for more details.
 *
 * You should have received a copy of the GNU Affero General Public License
 * along with this program.  If not, see <http://www.gnu.org/licenses/>.
 */

package org.cbioportal.legacy.service.impl;

import java.util.ArrayList;
import java.util.Collections;
import java.util.List;
import org.cbioportal.legacy.model.GeneFilterQuery;
import org.cbioportal.legacy.model.StructuralVariant;
import org.cbioportal.legacy.model.StructuralVariantQuery;
import org.cbioportal.legacy.persistence.StructuralVariantRepository;
import org.junit.Assert;
import org.junit.Test;
import org.junit.runner.RunWith;
import org.mockito.InjectMocks;
import org.mockito.Mock;
import org.mockito.Mockito;
import org.mockito.junit.MockitoJUnitRunner;

@RunWith(MockitoJUnitRunner.class)
public class StructuralVariantServiceImplTest extends BaseServiceImplTest {

  @InjectMocks private StructuralVariantServiceImpl structuralVariantService;

  @Mock private StructuralVariantRepository structuralVariantRepository;

  List<StructuralVariant> expectedStructuralVariantList =
      Collections.singletonList(new StructuralVariant());
  List<String> molecularProfileIds = Collections.singletonList("study_structural_variants");
  List<String> sampleIds = Collections.singletonList(SAMPLE_ID1);

  @Test
  public void getStructuralVariants() {

    List<Integer> entrezGeneIds = Collections.singletonList(ENTREZ_GENE_ID_1);
    List<StructuralVariantQuery> noStructuralVariant = Collections.emptyList();

    Mockito.when(
            structuralVariantRepository.fetchStructuralVariants(
                molecularProfileIds, sampleIds, entrezGeneIds, noStructuralVariant))
        .thenReturn(expectedStructuralVariantList);

    List<StructuralVariant> result =
        structuralVariantService.fetchStructuralVariants(
            molecularProfileIds, sampleIds, entrezGeneIds, noStructuralVariant);

    Assert.assertEquals(expectedStructuralVariantList, result);
  }

  @Test
  public void getStructuralVariantsByGeneFilterQueries() {

    List<GeneFilterQuery> geneFilterQueries = new ArrayList<>();

    Mockito.when(
            structuralVariantRepository.fetchStructuralVariantsByGeneQueries(
                molecularProfileIds, sampleIds, geneFilterQueries))
        .thenReturn(expectedStructuralVariantList);

    List<StructuralVariant> result =
        structuralVariantService.fetchStructuralVariantsByGeneQueries(
            molecularProfileIds, sampleIds, geneFilterQueries);

    Assert.assertEquals(expectedStructuralVariantList, result);
  }
}
